Random Graphical Model of Microbiome Interactions in Related Environments

Published in Journal of Agricultural, Biological, and Environmental Statistics, 2024

This paper develops a random graphical model for inferring microbiome interactions across different body sites and introduces a Bayesian approach for joint inference of microbiota systems.

Recommended citation: Vinciotti, V., Wit, E.C., & Richter, F. (2024). "Random Graphical Model of Microbiome Interactions in Related Environments." Journal of Agricultural, Biological, and Environmental Statistics. https://link.springer.com/article/10.1007/s13253-024-00638-6

Detecting Phylodiversity-Dependent Diversification with a General Phylogenetic Inference Framework

Published in bioRxiv, 2021

This paper introduces a novel method for detecting phylodiversity-dependent diversification using a Monte Carlo Expectation-Maximization framework applied to phylogenetic trees.

Recommended citation: Richter, F., Janzen, T., Hildenbrandt, H., Wit, E.C., & Etienne, R.S. (2021). "Detecting Phylodiversity-Dependent Diversification with a General Phylogenetic Inference Framework." bioRxiv. https://www.biorxiv.org/content/biorxiv/early/2021/07/04/2021.07.01.450729.full.pdf

Plant Diets of Land Snail Community Members are Similar in Composition but Differ in Richness

Published in Journal of Molluscan Studies, 2021

This study investigates the plant diets of land snail communities, showing similar compositions but differences in species richness.

Recommended citation: Hendriks, K.P., Bisschop, K., Kavanagh, J.C., Kortenbosch, H.H., Larue, A.E.A., ... (2021). "Plant Diets of Land Snail Community Members are Similar in Composition but Differ in Richness." Journal of Molluscan Studies, 87(4), eyab041. https://academic.oup.com/mollus/article/87/4/eyab041/6484603?login=false

Microbiome and Environment Explain the Absence of Correlations Between Consumers and Their Diet in Bornean Microsnails

Published in Ecology, 2021

This paper explores the role of microbiome and environment in the absence of correlations between land snails and their diet in Bornean microsnail communities.

Recommended citation: Hendriks, K.P., Bisschop, K., Kortenbosch, H.H., Kavanagh, J.C., Larue, A.E., Chee-Chean, P., & Etienne, R.S. (2021). "Microbiome and Environment Explain the Absence of Correlations Between Consumers and Their Diet in Bornean Microsnails." Ecology, 102(2), e03237. https://esajournals.onlinelibrary.wiley.com/doi/pdf/10.1002/ecy.3237

Introducing a General Class of Species Diversification Models for Phylogenetic Trees

Published in Statistica Neerlandica, 2020

This paper introduces a general class of species diversification models for phylogenetic trees and provides an EM framework for maximum likelihood estimation.

Recommended citation: Richter, F., Haegeman, B., Etienne, R.S., & Wit, E.C. (2020). "Introducing a General Class of Species Diversification Models for Phylogenetic Trees." Statistica Neerlandica. 74(3), 261-274. https://onlinelibrary.wiley.com/doi/pdf/10.1111/stan.12205

Fieldwork to Sample Microsnails for Diet and Microbiome Studies along the Kinabatangan River, Sabah, Malaysian Borneo

Published in Malacologist, 2019

This study documents fieldwork to sample microsnails for diet and microbiome analysis in the Kinabatangan River region of Malaysian Borneo.

Recommended citation: Hendriks, K.P., Bisschop, K., Kavanagh, J.C., Kortenbosch, H.H., Larue, A.E.A., ... (2019). "Fieldwork to Sample Microsnails for Diet and Microbiome Studies along the Kinabatangan River, Sabah, Malaysian Borneo." Malacologist, 72, 33-38. https://esajournals.onlinelibrary.wiley.com/doi/full/10.1002/ecy.3237